SE1730013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2754
  • Ricinus communis
  • SE1730013
  • hAT
  • Hat1
  • 29634:103189-103723
  • CTAACCTG
  • GTAGACCTGTTCATGGGCCGAGCCTGACCGGGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAACCT                   ---GA     A  G     GACTTTATTTTGAACA    CGAGCCCGCCCAAGCCCGAGAATTTTTTAATATCTCTCAGTTCAAGCCCGAGTCTGATTTTTTTTTAAATGGCCCGGCCCGGCTCGACCAATTGTTAAACCTGTAAATACGGATCGGGTCTGGGCGGGTTCGGGTCGGGCTTGAGTTTAGTTTTATTTAAATATATTATTAATAACAATTATAGACAAAAATAATAGGTAGCTAAATGGTAT
       GTAGACCTGTTCATGGGCC     GCCTG CC GGCTT                GGGC                                                                                                                                                                                                                    
       |||||||||||||||||||     ||||| || |||||                ||||                                                                                                                                                                                                                    G
       CATCTGGACAAGTACCCGG     TGGAC GG CCGGA                TGGG                                                                                                                                                                                                                    
GTCCAAT                   ACCCA     -  G     ----------------    TCCGGGTGTAAGAAGCACGGCCTGAACCTGTTATTAAAAACACATGTTTGGGGCGGGCTTAGGTATTTTCAGGCTTAAAAAACTCGACCCGAACCCTAAAAGTATTTTTGAGTTCAGGCCGGACCGGGCCGGGCTATAAATCAAATTAATCTTCTTTTTTTACGGTATGGATCGTAAATTTGAACACTGGAAGTTGAATATTAATTCACGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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