SE1730018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2759
  • Ricinus communis
  • SE1730018
  • hAT
  • Hat1
  • 30162:755350-755911
  • TAGAGGGG
  • GTAGACCTGTTCATGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGAGGG                   T -   ACCCGCCCGGCCCGCCCAGGCCCGCACTCTTCGGGCCGGGCTTGGACAACAATTTTTGTGTACAAACCCGGCCCAGCCCGAACCCATAAAAAGCCTGAATTTTTAGGGCCGGGCTTGGGATTTCCATAAAAATCCAAGTCTGGCCCGGCCCGGCCCGATGTTTAGTTTAATTAGAAAAAAAAAAATGTCATACCTAGCATTTGAATTTGTGACCTTTAACTTATAATTAAGTGCTACTTACCACTTAGCT
       GTAGACCTGTTCATGGGCC G GGT                                                                                                                                                                                                                                                          
       ||||||||||||||||||| | |||                                                                                                                                                                                                                                                           
       TATCTGGACAAGTACCCGG C CGG                                                                                                                                                                                                                                                          
GGGGAAA                   - C   ACCCGCCCGAGCCCGGCCCGGACTGGCCCGAACTGAAATAAAACTTGTTCGGGCTCGGGCGAGTTCGAGCCCTTAAAAAATTATAGTGAGTCGGGTTCGGGCTCGGGCTTAAAAAAAATTTTTCGGGCCGGGCTGGTTAACAATTTGGACATTTATGCCCAGCCCGACACGCCCAAGCCCAGCCCGAACTCAAATCAAAATAAATTTATATAATAATTATTGTTATTTTAATATTTGTTTTTATTATCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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