SE1730020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2761
  • Ricinus communis
  • SE1730020
  • hAT
  • Hat2
  • 29739:121028-121762
  • GTATTAAC
  • ACCATAGTTGTTAAAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATTA                  AAAAG            GATAAGGGCTCTTGGTGCCTGAGGCGCAAGGCGAGGTGCGCGCCTCATAGAAGTGAGGCACAAAAGATAAAATAAAATAAAACTAGGACTCATAACACAACCCATGCATAAAATAAAAAATATAACACAATCAAAGAAAAGACATAAAAGGATCATGACAATCATGCTCAAGAGGCATTTAACAAACAACAAAAAGGCATGTTCAAAAGAGATAATAAAATTAAAACACTCTTATAAATAACTAGAAGTCTTAGAATAGTAGAAATCCTAAAGCATCTTCCATTACTAATTTATTATAAATCTATATAAGTCTATAATTAGAGTCTTGA
      ACCATAGTTGTTAAAGGC     GCGCACCAAGGC                                                                                                                                                                                                                                                                                                                                         
      ||||||||||||||||||     ||||||||||||                                                                                                                                                                                                                                                                                                                                          
      TGGTATCAACAGTTTCCG     CGCGGACTCCGT                                                                                                                                                                                                                                                                                                                                         
CAATTA                  -----            TCTCCATGTGTTCCGCGTTCGGAATCGCGGAGTTCGGTTCTTTCCGTCCGCTGAAGTGATTCCGTTCCGCGCGCGGAAACACGCGGAGTTTGGATTCCGCTCCGCGTGGAAACATTATAAAACTGAAAATCAAAAAAAAAAAAGAAAATTCTGTACTTTACCAGAGTTAGGAAATAGTATCTGAATTATATCTTATACATCCGAATGGGTGTGGATTAATAGAGGTTTTCTTAAAAATAAAAAAAAATTTACCTTCTTTCATCTAATCCTGTTTTCTGTAGACTAGTTCTTCTTTTTCTCTTCTTAACGGATCTTCACATCCTCATCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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