SE1720022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2763
  • Ricinus communis
  • SE1720022
  • Mutator
  • M1
  • 29700:103014-103373
  • AAACTAAAA
  • GGCCAAATATATATTTACACTGCTAATTAGTTAGTTTAATACTTTAATTTTTGATTTAACCTAACAGATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAACTAAAA                 CA  -----------    A                                        GA   -TTAAGC           A      CTAAATATCTTAAA       TTAACCTA      CAATTTAATCTAACAAACACCTGAATTTTTT     TAATATTTAAACACCTTTATG
         GGCCAAATATATATTTA  CT           GCTA TTAGTTAGTTTAATACTTTAATTTTTGATTTAACCTAACA  TAC       TTTACTTTTTT TAATAT              TTTTAAT        ACATAT                               TTTAA                     
         |||||||||||||||||  ||           |||| ||||||||||||||||||||||||||||||||||||||||  |||       ||||||||||| ||||||              |||||||        ||||||                               |||||                      
         CCGGTTTATATATAAAT  GG           CGAT AATCAGTCAAATTGTGAAATTGAAAGCTAAATTGGATTGT  ATG       AAATGAAAAAA ATTATA              AAAATTA        TGTATA                               AAGTA                     
AAAATCAAA                 AC  TAACTTGAAAC    A                                        --   TCTACTT           C      --------------       TGAAAAAC      ----------------------------CAA     AGTTATTTAATTGTACATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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