Plant MITE

SE1730023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2764
Ricinus communis
SE1730023
hAT
Hat2
27758:69492-70182
CTAGGAAT
CTAG

Secondary structure and sequence

TSD TIR

5'

3'

        GAAT         C      --ACGCC       A   GCCCACAAGGCGTAAGCCTTAGTGCCTCAAGTCGAGAAAGGCAGGCGACTTCACTAAGGCGCGCCTTTGTAATATTTTGACTTTTAGCTGTTTTTTTTTCTTTTAAGACATGAAATGATTTCAGCCTTCATCATAGACTTAATATAGAATATATAGGCTTACGCACACCTAATTATCTCCAAAAAAAATTTTAAAAAAAATGGAAGAAAGAAAATTAGGGCAAAAAGACATCTGATCAAAAAAAAGAAGAGAAGAATTGCCTAGAAGTGTAGGAGTAGGACCAAGACCATAATTATAGACTTATA
    CTAG    CATAGTTGT AAAGGC       TGAGGCG GAG                                                                                                                                                                                                                                                                                                                 
    ||||    ||||||||| ||||||       ||||||| |||                                                                                                                                                                                                                                                                                                                  
    GATC    GTATCAACA TTTCCG       CGTGGTT CCG                                                                                                                                                                                                                                                                                                                 
TAAG    ----         A      CTTTCCA       -   TTATTCCCGAGAACCACGAACTCCGCGTTCCACGTTCCGCTCCGCGCGCGGACTATCTTCACTCCGCGTTTTCTATTTTATTTTATTTTGATCCTGAGTATTGTGTTGGGTACATATTTTCTTTTTAATATTGTGTGTTGCTTTCTTTTCTTTATTTTTCTAGTGCTGTTAGTATAAGTTCTCCGTAAATTGTTTGTTGTTTTTCCGTACAAGTTTTCTCTACTATTTTCATTTTGTATCAAAATATTTATTGATCTTCAGGATCTCATGATCTTTAGGGTTTCGTAGAAGGTAATGATTAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1730023

CTAGGAATCATAGTTGTCAAAGGCACGCCTGAGGCGAGAGGCCCACAAGGCGTAAGCCTTAGTGCCTCAAGTCGAGAAAGGCAGGCGACTTCACTAAGGCGCGCCTTTGTAATATTTTGACTTTTAGCTGTTTTTTTTTCTTTTAAGACATGAAATGATTTCAGCCTTCATCATAGACTTAATATAGAATATATAGGCTTACGCACACCTAATTATCTCCAAAAAAAATTTTAAAAAAAATGGAAGAAAGAAAATTAGGGCAAAAAGACATCTGATCAAAAAAAAGAAGAGAAGAATTGCCTAGAAGTGTAGGAGTAGGACCAAGACCATAATTATAGACTTATATTAAATTAGTAATGGAAGATGCTTTGGGATTTCTAGTACTCTAGGACTTCTAGTTATTTATAAAACTATGTTTTACTTTTATCATCTCTTTTGAACATGCCTTTTTGTTGTTTGTTAAATGCCTCTTGAATATGATTGTCGTGATCTTTTTATTTCTTTTCTTTCGTTGTGTGTTATAATTTTTCTTTTATACATGGGTTGTGTTATGAGTCCTAGTTTTATTTTATTTTATCTTTTGCGCCTCACTTCTATCAGGCGCGCGCCTCGCCTTGCACCTTGCGCCTCAAGCACCAAGAGCCCTTATTGCCTTGGTGCACCTTTCGCCTTTAACAACTATGCTAGGAAT

Copy Cancel