SE1720025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2766
  • Ricinus communis
  • SE1720025
  • Mutator
  • M10
  • 29671:133864-134325
  • TAATATTTT
  • AATATTTTGGCTAAATTGCCAAAATAATCCTGTATTTTTATACTTGTTATCAAATTTAGCATGTAGTTTTTAGATTTTAAATTTCAACATCATACTTTAACATTGA

Secondary structure and sequence

TSD    TIR
5'



3'
 T      TT    A      C    T  T C        TA         T   A          AGT                T  AC                  TTTCAATCTTA   T  -----    AA   TCAGCTAAATTTGCTGGTGGCGTGAATTACGACACCAACAAAAATGGATGAGTCAAAATTGGAGTTGTTGATTCTTCCCATTAACGCCGTCGTTTAAGCACATA
  AATATT  GGCT AATTGC AAAA AA C TGTATTTT  TACTTGTTA CAA TTTAGCATGT   TTTTAGATTTTAAATT CA  ATCATACTTTAACATTGA           GGT TC     GTAA  TTA                                                                                                        
  ||||||  |||| |||||| |||| || | ||||||||  ||||||||| ||| ||||||||||   |||||||||||||||| ||  ||||||||||||||||||           ||| ||     ||||  |||                                                                                                        A
  TTATAA  CCGA TTAACG TTTT TT G ACATGAAA  GTGAACAAT GTT AAATTGTGCA   AAAGTTTAAAATTTAA GT  TGGTATGAAATTGTAATT           AAT CG     GAGG  GTG                                                                                                        
TT      -T    A      A    T  T A        -C         T   A          ---                -  CA                  ----------T   -  TACTT    --   TTGTTTTCTTACCCTTCCCGATTCGTTGCGGTAATGATTTGTAACAGTAAATTCTTGTATTTTAATTATTTTGGGATTTCAATTCTTTACTTTTTTTATAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End