SE1720026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2767
  • Ricinus communis
  • SE1720026
  • Mutator
  • M4
  • 30162:637194-637610
  • TTGATAATA
  • AGGCCTAATAGCCTACACAATCCAAACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGATAAT           C   CAC        -    TATGAGAT   GGCCAATTCTTAAAAAATTGTCAATTTAGCCACGATTTAACAAATTGAGTGTAATTTTGGCCTAATTGAGCTATTTGTCAAAATTAAGCAACACGAACAGTAACATGAACGCCAATTAGGAAATGAGAAATCCAAATTGATGGGTTCTAATGCCACATTATTT
        AGGCCTAATAG CTA   AATCCAAA CTTT        TTT                                                                                                                                                                   
        ||||||||||| |||   |||||||| ||||        |||                                                                                                                                                                   A
        TCTGGATTATC GAT   TTAGGTTT GAAA        CGT                                                                                                                                                                   
 TAATAGT           A   TTT        A    --------   CATCAAACGATAAACCGGTTAAAAATTTTTAATAGTTAAATCGGTACTAAACTGGTTAATTCACGTTAAAATCGGTTTAACTCAATGACCAGTTTTAATTCGTTGTACCAACCATTGTACCTACGTTAAATCCTTTACTCTTAAGTTTTAATTCATTGTGCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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