SE4260003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2771
  • Cajanus cajan
  • SE4260003
  • Micron
  • Mim1
  • Scaffold137903:1967-2428
  • TATATAT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
                          ATATATATATATGAGGAGGGATCCTTTTACTCCAGAAGTAAGTTTACCTAGACTTACTTCGTTCAATAACTCATGTTCTATATTGAATTTCAACGATCCAACCGTTCAATTTAAAGTTCTTAATCCATAGATCCAATCTATAAATTTTTAGAAAATTTGAAAATCATTTGATACTTCATTCCATTAAATCAAATTGACGTA
                   TATATAT                                                                                                                                                                                                         
                   |||||||                                                                                                                                                                                                          
                   CTCTTCC                                                                                                                                                                                                         
TCTCTCTCTCTCTCTCTCT       CTAGGAAAATGAGATTCTCATTCAGATGGATCTGAATGAGGTAAGTTATTGAATACAGGATGTAGTTTAAAGTTGCTAGGTTGGTAAGTTAAATTTCAAGAATTACGTATCTAGTTTATACGTTTAAAAATCTTTTAAATTTTTAGTAAACTATGAAGTAAAGTAATTAAACTTATTTACATATTTTACTAAAATACTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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