SE4220008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2776
  • Cajanus cajan
  • SE4220008
  • Mutator
  • M2
  • Scaffold126374:55877-56271
  • TATAATGAA
  • AGGCAAAAATATATTTTTCGTCCCTTATATTATTTATTAGATTCAATTTAGTCTTACTTTAATTAATTGAATCAATTTAGTCCCATATCTTTAAAATGTATCTCAATGTTTGATTTTCCGTCTCTTCCGTTTAAATACTTAACGGATATGACACGTGTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAATGA                           T            AT            T                                                              C   C                         A              C    ATGCCACATGGCTGGACATCATG
        AGGCAAAAATATATTTTTCGTCCCTTA ATTATTTATTAG  TCAATTTAGTCT ACTTTAATTAATTGAATCAATTTAGTCCCATATCTTTAAAATGTATCTCAATGTTTGATTTT CGT TCTTCCGTTTAAATACTTAACGGAT TGACACGTGTCATG TGTT                       
        ||||||||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||                        
        TCCGTTTTTATATAAAAAGTAGGGAAT TAATAAATAATC  AGTTAAATCAGG TGAAATTAATTAGCTTAGTTAAATCAGGGTGTAGAAATTTTACATAGAGTTACAAATTAAAA GCA AGGAGGCAAATTTATGAATTGTTTA ACTGTGCACAGTAC GTGC                       
AAGTAATA                           T            AC            -                                                              A   A                         A              A    ACAGTACAACAGTACGGTACACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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