Plant MITE

SE4220014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2782
Cajanus cajan
SE4220014
Mutator
M1
CcLG06:10621422-10621624
TAATTATAA
AGAGTTAATCATTCATACATTGTTAGTGTAAAGTTTTTTACATTG

Secondary structure and sequence

TSD TIR

5'

3'

TAATTATA             C                         -      ATGA   C         C      -AT    TTATTTTATT       TA
        AGAGTTAATCATT ATACATTGTTAGTGTAAAGTTTTTT ACATTG    CAA CAATCATAT TTTTAA   TATT          TTTATTT  
        ||||||||||||| ||||||||||||||||||||||||| ||||||    ||| ||||||||| ||||||   ||||          |||||||   
        TCTCAATTAGTGG TATGTAACAATCACATTTCAAAAAA TGTGAT    GTT GTTAGTATA AAAATT   ATAG          GAATAAA  
AATATTAA             A                         A      ---G   A         A      ATC    TACAGTCAAT       TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220014

TAATTATAAGAGTTAATCATTCATACATTGTTAGTGTAAAGTTTTTTACATTGATGACAACCAATCATATCTTTTAAATTATTTTATTTTATTTTTATTTTATTAAATAAGTAACTGACATGATACTATTAAAAAATATGATTGATTGGTAGTGTAAAAAAACTTTACACTAACAATGTATAGGTGATTAACTCTAATTATAA

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