SE4260020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2788
  • Cajanus cajan
  • SE4260020
  • Micron
  • Mim1
  • CcLG09:9094647-9095048
  • ATATATA
  • ATATATATATGAGGATGAATCCGTTTACTCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
               T A         C     AAATAAG       TAACTCATGTTCTATATCAAATTTCAACGATCCAACCGTTGAATTTAACGTTATTAATGCATAGATCAAATCTGCAAATTTTTAAAAAATTTGAAAATCATTTGATACTTCGTTTCATTAATTCAAATTGACGGATAATTATAAAAATATGTTATC
ATATATATATGAGGA G ATCCGTTTA TCCAG       TCTTCAA                                                                                                                                                            
||||||||||||||| | ||||||||| |||||       |||||||                                                                                                                                                             
TATATATATACTCTT C TAGGCAAAT AGGTC       TCATTCA                                                                                                                                                            
               C C         A     ------C       AATGGATCTGAATGAAGCAAGTTATTGAGTAAAAGATGTAATTTAAAGTTGCTAGGTTGACAACTTAAATTTCAGGAATTACGTATCTAATTTAGACATTTAAAAATTTTTTAAACTTTTGATAAACTATGAATCAAAGTAATTAAGTTTAACTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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