SE4250024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2792
  • Cajanus cajan
  • SE4250024
  • PIF/harbinger
  • To8
  • CcLG02:17606026-17606286
  • TAT
  • TGTTTGGATAAGTTTTTCTAGAAACACTTCTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGAGCC       A    -      T  AAA           AAAAAAAATTAAAATTAAAA          --------------TTT           A   C   A               AAATAAGAT    GAA     AATAG
        TGTTTGG TAAG TTTTTC AG   CACTTCTAGGA                    TTAAAATAAG                 TTCCATAAGCT AAA TAG TTATGCATGAGTTAA         TTTG   AAACT     
        ||||||| |||| |||||| ||   |||||||||||                    ||||||||||                 ||||||||||| ||| ||| |||||||||||||||         ||||   |||||      
        ACAAACC ATTT AAAAAG TC   GTGAAGATCCT                    AATTTTATTC                 GAGGTATTTGA TTT ATC AATACGTATTTAATT         AAAC   TTTGA     
TATCCAGT       C    G      -  ATC           ------------------CC          TTCTTTCTACTTTATTT           C   A   A               ---------    ATC     GAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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