SE4230025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2793
  • Cajanus cajan
  • SE4230025
  • hAT
  • Hat3
  • CcLG02:20305413-20305890
  • ATGATACA
  • CATAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGATA   -          --      C        T -------     TTCATGATACCCGTCCCCGTCCCCACAAGTAAAACTCATCCCCATCCCCGTCCCCATACCCGTCAGGTATGGATTTTCATCCCCATCCCCATCCCCGTCGGGTATCGGGTATACCCGTACCCGTACCCGTACCCGTCAATTTTTTTATTTTTTATTTTTTTTTTTAATATACATAAAAAAATATTAAAATTTTT
      CAT AGGGATGGCA  ACGGGG GGGGCGGG A       CGGGT                                                                                                                                                                                                  
      ||| ||||||||||  |||||| |||||||| |       |||||                                                                                                                                                                                                  T
      GTA TCCCTACCGT  ATATGG GCATGGGC A       TGGGC                                                                                                                                                                                                  
 ACATA   A          TT      -        - TCCATTA     TTGGGCAGGGCTGAAACTGCCCCTTATGGGCCAAACTGGCCCATGCCCATGCCCATGCCCATGCCCATGCCCATTTTGGGCTATATAACTTAGCCCATGCTCATGCCCATGCATGAATGGGCGGGGCATGGGCATGAGCATGGGCAGGGGCAAGAGTAAAAATTAAATTATAAGTGAAAATTAAATTAATATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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