Plant MITE

SE4210027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2795
Cajanus cajan
SE4210027
Tc1/Mariner
St1
CcLG02:16728430-16728711
TA
TACTCCCTCTATCCCATTCTAAGTGTTGCATTAG

Secondary structure and sequence

TSD TIR

5'

3'

     CC          TC         CA    AAGAAAAAATAAGTCCTAAAATACATGTCATATTAACTTTT  -      --   TAATTACT    C  TATATATACCCCTAATAATATTATGTAGAAAAAGATTTTTGTGTTGCATTGTTTCTAG
TACTC  TCTATCCCAT  TAAGTGTTG  TTAG                                         CA ATGTAG  TAT        TCTT TC                                                          
|||||  ||||||||||  |||||||||  ||||                                         || ||||||  |||        |||| ||                                                           
ATGAG  AGGTAGGGTA  ATTCATAGT  AATC                                         TG TTAGTA  TTT        CGAT TA                                                          
     TA          TT         AG    ------------------------------CCAATAAAATG  T      AT   --------    -  TTTATCTACTTTCTCTTAATATTAAAATGTTTTAATCGGAATACTAGTTAGAAGAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4210027

TACTCCCTCTATCCCATTCTAAGTGTTGCATTAGAAGAAAAAATAAGTCCTAAAATACATGTCATATTAACTTTTCAATGTAGTATTAATTACTTCTTCTCTATATATACCCCTAATAATATTATGTAGAAAAAGATTTTTGTGTTGCATTGTTTCTAGCAAAGAAGATTGATCATAAGGCTAATTTTGTAAAATTATAATTCTCTTTCATCTATTTATTAGCTTTTAATGATTTGTGTAAAATAACCCTAAGATGATACTTATTATGGGATGGAATGAGTA

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