Plant MITE

SE4220031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2799
Cajanus cajan
SE4220031
Mutator
M6
Scaffold128680:453619-453819
TAATTTTAT
TAATTTTATGAGTTAATCACCTATACATTGCTAGTGTAAAGTTTTTTTACACTGACAACCAATCAGATCTTTTAATAGTG

Secondary structure and sequence

TSD TIR

5'

3'

    TT   T                       A          T                                    CCTTTT    TTTA     ATTAA
 TAA  TTA GAGTTAATCACCTATACATTGCT GTGTAAAGTT TTTTACACTGACAACCAATCAGATCTTTTAATAGTG      TTAT    ATTTG     
 |||  ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||      ||||    |||||      
 ATT  AAT CTCAATTAGTGGATATGTGACGA CACATTTCAA AAAATGTGGCTGTTGGTTAGTCTAGAAAATTATCAT      AATA    TAAAC     
T   TT   -                       C          T                                    ------    -CAG     GAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220031

TAATTTTATGAGTTAATCACCTATACATTGCTAGTGTAAAGTTTTTTTACACTGACAACCAATCAGATCTTTTAATAGTGCCTTTTTTATTTTAATTTGATTAAATAAGCAAATGACATAATACTATTAAAAGATCTGATTGGTTGTCGGTGTAAAATAACTTTACACCAGCAGTGTATAGGTGATTAACTCTAATTTTAT

Copy Cancel