Plant MITE

SE4250032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2800
Cajanus cajan
SE4250032
PIF/harbinger
To11
CcLG04:1839153-1839372
TAA
AGAGCATCTCTAGTGGGGGTTGCTTATAAGCAACCTCCTGTGCCACATCATGCCACATCAGCTCTTTTTCACTTTATGGGTTGCTTAAATTTTAGTACTGAAGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TA         C    GGG     C       C   C                 CC                                           CT AA    CT
  AGAGCATCT TAGT   GGTTG TTATAAG AAC TCCTGTGCCACATCATG  ACATCAGCTCTTTTTCACTTTATGGGTTGCTTAAATTTTAGTA  G  GCTT  
  ||||||||| ||||   ||||| ||||||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  |  ||||   
  TCTCGTAGA ATTA   CCAAC AATATTC TTG AGGACACGGTGTAGTAC  TGTAGTTGAGAAAAGGTGAAATACTCAATGAATTTAAAATTGT  C  CGAA  
AA         C    ACA     A       A   A                 TA                                           TT AA    CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250032

TAAGAGCATCTCTAGTGGGGGTTGCTTATAAGCAACCTCCTGTGCCACATCATGCCACATCAGCTCTTTTTCACTTTATGGGTTGCTTAAATTTTAGTACTGAAGCTTCTACAAGCAACTTTGTTAAAATTTAAGTAACTCATAAAGTGGAAAAGAGTTGATGTATCATGATGTGGCACAGGAAGTTACTTATAAACAACCACAATTACAGATGCTCTAA

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