SE4250036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2804
  • Cajanus cajan
  • SE4250036
  • PIF/harbinger
  • To1
  • CcLG02:13483236-13483457
  • TTA
  • AGAGCATCTCCAATGGGGGTTGCTTATAAGCGACCCTCTGTGCCACATCACTGCCAAATCAACTCTGGCCCACTTTATAGGTTGCTTAAATTTTAGCAGAGTTGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         C                        C                     A                     A     C                      CT
  AGAGCATCT CAATGGGGGTTGCTTATAAGCGAC CTCTGTGCCACATCACTGCCA ATCAACTCTGGCCCACTTTAT GGTTG TTAAATTTTAGCAGAGTTGCTT  
  ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||   
  TCTCGTAGA GTTACCCCCAACGAATATTCGTTG GGGACACGGTGTAGTGATGGT TAGTTGAGACCGGGTGAAATA TCAAC AATTTAAAATCGTCTCAACGAA  
AT         C                        A                     G                     C     A                      CA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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