Plant MITE

SE4220037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2805
Cajanus cajan
SE4220037
Mutator
M9
CcLG02:24653214-24653400
ATAGAAAAA
GAGTAATGCTACATATACAACAAAACTTATACAACATCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

ATAGAAAAA        C  C            ------------      A       AC    ATAT          C     ------------      TT
         GAGTAATG TA ATATACAACAAA            ACTTAT CAACATC  TTTT    CTATCTCTCT CATTA            CTTCAT  
         |||||||| || ||||||||||||            |||||| |||||||  ||||    |||||||||| |||||            ||||||  G
         TTCATTAC AT TATATGTTGTTT            TGAATA GTTGTAG  AAAA    GATAGAGAGA GTAGT            GAGGTA  
AAAAAGATA        A  A            TTAACATGTTGT      C       CA    CACC          A     AGTTATTATAGA      TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220037

ATAGAAAAAGAGTAATGCTACATATACAACAAAACTTATACAACATCACTTTTATATCTATCTCTCTCCATTACTTCATTTGTTATGGAGAGATATTATTGATGATGAAGAGAGATAGCCACAAAAACGATGTTGCATAAGTTGTTGTACAATTTTTGTTGTATATATAACATTACTTATAGAAAAA

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