SE4220041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2809
  • Cajanus cajan
  • SE4220041
  • Mutator
  • M1
  • Scaffold133177:100040-100272
  • TAATAAATA
  • TAGAGTTAATCACTTATACACTGCTAGTGTAAAGTTTTTTTACACTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAAA                                               -------T   --     TATATCTTTTAACTATGTCATATCACTGTAAATACATTTACTTTTAACA
       TAGAGTTAATCACTTATACACTGCTAGTGTAAAGTTTTTTTACACTG        CAA  CCAAT                                                 
       |||||||||||||||||||||||||||||||||||||||||||||||        |||  |||||                                                  
       ATCTCAATTAGTGGATATGTGATGGTCACATTTCAAAAAAATGTGAT        AAT  CATTT                                                 
ATAAATA                                               CGTTGGTT   AT     CAAAAAAATGTGATTGTTGGTTAATATAGAAAATTGACACAGTACAGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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