SE4210042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2810
  • Cajanus cajan
  • SE4210042
  • Tc1/Mariner
  • St2
  • Scaffold136978:557-974
  • TA
  • TACTCCCTCCGTTTTTTTTTCATAGTCGTTTAAGGTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                               ---A   T    --------CAC     TTA   -  ATCATTGATATTTTAGTTTTCAAAAATATTTATTACTTACTTTCCTATTTTACCCTTTTTTTTTGCATTTTTTAGACTGTTGAACTACTCCATTAAATAGTTGTCCCTTTTTTTGTTTTTTTATAGTATTTTGTTGGGAACATATTGC
TACTCCCTCCGTTTTTTTTTCATAGTCGTTT    AGG TTTG           GGGAA   AGG AA                                                                                                                                                    
|||||||||||||||||||||||||||||||    ||| ||||           |||||   ||| ||                                                                                                                                                    T
ATGAGGGAGGCAAAAAAAAAGTATCAGCAAA    TCT AAAC           AGTAA   CAG AT                                                                                                                                                    
                               ACAG   C    AACAAAAAAAA     ---   T  AATGATTTTAGTTACTCAATAATTAAAAAAAGAAGGTAAAAATGGGAACTATTAATTATGTACAAAGAACTTGTTACACACATAAATAAAAATTACAGATGGATTAAAAAGAGATTGATGAGTATATTTCAATTACACGTAAATATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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