SE4220044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2812
  • Cajanus cajan
  • SE4220044
  • Mutator
  • M10
  • CcLG07:1301250-1301411
  • TTAGTTTAA
  • TAGTTTAAGAGTAATGATACATGTACAACAAAATTTTACAACATGACATTTTGTATCCATCTCTCTATAATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T                               ---------T        G CA      A  C        ATA    ATG
 TAG TTAAGAGTAATGATACATGTACAACAAAATT          TACAACAT A  TTTTGT TC ATCTCTCT   ATTA   
 ||| |||||||||||||||||||||||||||||||          |||||||| |  |||||| || ||||||||   ||||    
 ATT AATTCTCATTACTATGTACATGTTGTTTTAA          ATGTTGTA T  AAAACA AG TAGAGAGA   TAGT   
A   T                               CATATTTAAC        G AG      A  A        -CA    GAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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