SE4250049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2817
  • Cajanus cajan
  • SE4250049
  • PIF/harbinger
  • To17
  • CcLG02:16903295-16903674
  • TAA
  • AGAGCATCTCCAGCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             C  -----CAGA    ATTGGAGTTCTTAAACATTAAGCAACAGTATTTCTCAATTCTCAACATTGGAGTATGTCAAGTGGCTGCCACATGTAAGCTATGTCGCTTAATTAAGCAGCAGTGTCTTAACTGACAAAAGGAATAAAAAATATAATTTTACTGTAGGATGACAATTGATG
  AGAGCATCTCCAG GT         TCTT                                                                                                                                                                 
  ||||||||||||| ||         ||||                                                                                                                                                                 G
  TCTCGTAGAGGTT CG         ATTC                                                                                                                                                                 
AA             A  AATCAACGA    ACTTAAAGAATCAAAAAAAATCACCTGGGGTAATAAGGTACATTCTAAATCCTTAAAAATGTTTTATAACGAGGTTACCATTTAAAGAATAAATTCAAGAATTGAATTGATACCTTGGATATTAATTATAGAAAAAGGAGATAAGGTTACGTCAGAGAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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