Plant MITE

SE4220050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2818
Cajanus cajan
SE4220050
Mutator
M12
CcLG11:36908229-36908445
TTTAGGAAA
AAAGGACAAAACTTAGGTACAATTTTTTAGATGCGGATGGTGTTTTTTTATATTAGAGTTGGAGTTTTACCTTGGTATTATGCACTTGTATTTAATG

Secondary structure and sequence

TSD TIR

5'

3'

TTTAGG      C            C                A       -     AT                   C      T      --CT     -      CAA
      AAAGGA AAAACTTAGGTA AATTTTTTAGATGCGG TGGTGTT TTTTT  ATTAGAGTTGGAGTTTTAC TTGGTA TATGCA    TGTAT TTAATG   
      |||||| |||||||||||| |||||||||||||||| ||||||| |||||  ||||||||||||||||||| |||||| ||||||    ||||| ||||||   G
      TTTCCT TTTTGAATCCAT TTAAAAAATCTACGTT ACTACAA AAGGG  TAGTTTCAATCTTAAAATG AGCCAT ATATGT    ATATA AATTAC   
AAAGGA      A            A                A       C     AT                   A      C      ATTT     T      TCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220050

TTTAGGAAAGGACAAAACTTAGGTACAATTTTTTAGATGCGGATGGTGTTTTTTTATATTAGAGTTGGAGTTTTACCTTGGTATTATGCACTTGTATTTAATGCAAGCCTCATTAATATATATTTATGTATACTACCGAAGTAAAATTCTAACTTTGATTAGGGAACAACATCAATTGCATCTAAAAAATTATACCTAAGTTTTATCCTTTAGGAAA

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