SE4220051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2819
  • Cajanus cajan
  • SE4220051
  • Mutator
  • M13
  • Scaffold127218:291585-291821
  • GTATTTTTT
  • GGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATTTTTT   AATA     C         G   -GGG       G        T        AAACCA                    C                   TTT    TAAA
         GGA    GATCC CTGACTTTG AGG    AAAGTTA GGTAACTT ACACATTT      TTGGATTTGTAATAGTAGAT AGATTGTGACACGTGTACA   AAGT    
         |||    ||||| ||||||||| |||    ||||||| |||||||| ||||||||      |||||||||||||||||||| |||||||||||||||||||   ||||     
         CCT    CTAGG GACTGAAAC TCT    TTTCAAT CCATTGAA TGTGTAGA      AACCTAAACATTATTATCTA TCTAACACTGTGCACATGT   TTTA    
TTTTTTATG   AGGC     A         -   ATAG       A        T        GTTAGC                    A                   ---    TATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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