SE4220052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2820
  • Cajanus cajan
  • SE4220052
  • Mutator
  • M14
  • CcLG10:19735077-19735290
  • AGAGTAGGA
  • GGAGGCTATTGCTCCGGTGCCCTCTTATTTGAAGGGGTTTTGGTGCCCCTCAGTACAAAAGTTGGGTTTTTAGGGGCAATAAGGTAAATTGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
   AGAGTA  A  CT                                                                                       AATT   CG
         GG GG  ATTGCTCCGGTGCCCTCTTATTTGAAGGGGTTTTGGTGCCCCTCAGTACAAAAGTTGGGTTTTTAGGGGCAATAAGGTAAATTGATA    GTC  
         || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||   
         CC CC  TAACGAGGCCACGGGAGAATAAACTTCCCCAAAACCACGGGGAGTCATGTTTTCAACCCAAAAATCCCCGTTATTCCATTTAACTAT    CGG  
AGGATGAGA  -  --                                                                                       ----   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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