Plant MITE

SE4250054

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2822
Cajanus cajan
SE4250054
PIF/harbinger
To11
CcLG10:8070310-8070526
TTA
AGAGCATCTGCAGTGGAGGTTGCTTAAGCAACCTCCTATGTCACATCATGTCA

Secondary structure and sequence

TSD TIR

5'

3'

TT                 G        --           A               CATCATGTCAC       -C        A   -A     -----    TAAATTTTAGTAA
  AGAGCATCTGCAGTGGA GTTGCTTA  AGCAACCTCCT TGTCACATCATGTCA           ATCAGCT  TTTTCATT TTT  TGGGT     TGCT             
  ||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||           |||||||  |||||||| |||  |||||     ||||              
  TCTCGTAGACGTCATCT CAACGAAT  TCGTTGGGGGA ACGGTGTAGTACGGT           TAGTCGA  AAAGGTGA AAA  ATTCA     TCGA             
AT                 A        AT           C               ----------A       AC        A   AA     TGACC    AGATGTTCTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250054

TTAGAGCATCTGCAGTGGAGGTTGCTTAAGCAACCTCCTATGTCACATCATGTCACATCATGTCACATCAGCTCTTTTCATTATTTATGGGTTGCTTAAATTTTAGTAAAGTTTCTTGTAGAAGCTCCAGTACTTAAAAAAAAGTGGAAACAAGCTGATATGGCATGATGTGGCACAGGGGGTTGCTTATAAGCAACATCTACTGCAGATGCTCTTA

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