Plant MITE

SE4250064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2832
Cajanus cajan
SE4250064
PIF/harbinger
To8
Scaffold132119:133729-133994
TTA
AGAGTTTGTTTTGGTAAACTTCTCCATAAACACTTCTAGAAGAGAAAAATAGAAAGGAAAAATAAAATAAAGTTCTCTATAAACTAAAATTGGCTTATGCATAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT  A        T   A       C  T                      -   A        A        AG          A                   A    AATTT    AAATTCTTTTCTATT
  AG GTTTGTTT GGT AACTTCT CA AAACACTTCTAGAAGAGAAAAA TAG AAGGAAAA TAAAATAA  TTCTCTATAA CTAAAATTGGCTTATGCAT AGTT     GTAA               
  || |||||||| ||| ||||||| || |||||||||||||||||||||| ||| |||||||| ||||||||  |||||||||| ||||||||||||||||||| ||||     ||||                
  TC CAAACAAA CTA TTGAAGA GT TTTGTGAAGATCTTTTTTTTTT ATT TTCCTTTT ATTTTATT  AAGAGGTGTT GATTTTGATCGAATACGTA TCAA     CATT               
AT  C        C   G       A  C                      T   C        G        CG          C                   G    -CTTT    CTAAAACCTCTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250064

TTAGAGTTTGTTTTGGTAAACTTCTCCATAAACACTTCTAGAAGAGAAAAATAGAAAGGAAAAATAAAATAAAGTTCTCTATAAACTAAAATTGGCTTATGCATAAGTTAATTTGTAAAAATTCTTTTCTATTAGTTTCTCCAAAATCTTACTTTCAACTGATGCATAAGCTAGTTTTAGCTTGTGGAGAAGCTTATTTTAGTTTTCCTTCTTATTTTTTTTTTTCTAGAAGTGTTTCTGAAGAAGTTGATCCAAACAAACCCTTA

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