SE4250068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2836
  • Cajanus cajan
  • SE4250068
  • PIF/harbinger
  • To24
  • Scaffold134184:3223-3614
  • TTA
  • AGAGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       CTCCAATG     CTTTTATCTGGATTCTTAAGTTTAAGCTCTTATTGCTTATAAGAAACCTGTATTGGAGCATGCTGACATGACAGGTCAAATTGCTAAAATTTAAGCACTGTTGCTTATATAAGAGACGATTGCTTAAGAATAGAAAATAATTTAATATTTTCTTCCTTCACTAAAGCCAACAACTA
  AGAGCAT        CTAGA                                                                                                                                                                                
  |||||||        |||||                                                                                                                                                                                 
  TCTCGTA        TTACT                                                                                                                                                                                
AT       ----AATG     CTCAACGAATTCGTTGAGAGTAAGTGGAATTTACCTAGAGTATGACAGTACAGTGAGTATGCGTTGAATATAATATAAAAATATTAAAAATAAAGTTAATTTCAACGAATATTCGTGGAGGTGAAAAATTAGTGAGTATGAAGGAAAAATTATTTAAAATTTTTCAAATTAATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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