SE4220069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2837
  • Cajanus cajan
  • SE4220069
  • Mutator
  • M5
  • Scaffold132912:146701-147141
  • ATTTTACAT
  • ATGGCTAAAACCCTAATTTGGTCCCTTATAATATTAAAAAAATTTAATTTGGTCCCACTTTAATTTTTAGTTTCAATTTAGTCCCAATTTATTTTAAAATTTTCGATGTGGGACTTCTGTCCAAATTTTACAAACGGCGTTAAAGGTCCGAGAGAATCACGGCCGTGATTC

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTAC                                          T                         -A    C                             C                                                         G C       CAAA   C   T T         G  --  GGGAAC     GAGA
       ATGGCTAAAACCCTAATTTGGTCCCTTATAATATTAAAAAAA TTAATTTGGTCCCACTTTAATTTTT  GTTT AATTTAGTCCCAATTTATTTTAAAATTTT GATGTGGGACTTCTGTCCAAATTTTACAAACGGCGTTAAAGGTCCGAGAGAATCACG C GTGATTC    TCA GGT G GATTCTCAC AC  CT      CACCT    
       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    ||| ||| | ||||||||| ||  ||      |||||    T
       TACCGATTTTGGGATTAAATCAGGGAATATTATAATTTTTTT AATTAAACCAGGGTGAAATTAAAAA  CAAA TTAAATCAGGGTTAAATAAAATTTTAAAA TTACACTCTGAAGACAGGTTTAAAGTGTTTGCCGCAATTTCCAGGCTCTTTTAGTGC G CACTAAG    AGT CCA C CTAAGAGTG TG  GA      GTGGA    
TACATTT                                          T                         AA    A                             A                                                         G C       ----   A   T T         G  AA  -AAAAC     GAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End