SE4220072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2840
  • Cajanus cajan
  • SE4220072
  • Mutator
  • M5
  • CcLG07:11288793-11289203
  • TAATTACTA
  • TAGGCTAAAACCCTAATTTAGTCCCTTATAGTATTTTAAAGTTTCAATTTAGTCTCACTTTAATTTTTGGGTTCAATTTAGTTCCACCTATTAAAAATTCTAGCAATGTTTGCCTTCCATCTAAATTTCTCAAACGCCGTTTAGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTAC                   A                          A                                       C  A        T             C     ATC                C         T    AT      GAGAATCACGGGCGTGATTCTCATAACTCTTACTTAGCAG
       TAGGCTAAAACCCTAATTT GTCCCTTATAGTATTTTAAAGTTTCA TTTAGTCTCACTTTAATTTTTGGGTTCAATTTAGTTCCA CT TTAAAAAT CTAGCAATGTTTG CTTCC   TAAATTTCTCAAACGC GTTTAGGAG GTCC  GTGATT                                        
       ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||||   |||||||||||||||| ||||||||| ||||  ||||||                                         
       ATCCGATTTTGGGATTAAA CAGGGAATATTATAAAATTTCAAAGT AAATCAGGGTGAAATTAAAAACCCAAGTTAAATCAGGGT GA AGTTTTTA GATTGTTACAAAT GAAGG   ATTTAAAGAGTTTGCG CAAATTCTC GGTA  CTCTTA                                        
ATCATTA                   C                          C                                       A  C        T             A     CAA                A         -    --      GTGTGAGCACTAAGGGTACCACACTTAGTGTATTTTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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