Plant MITE

SE4220077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2845
Cajanus cajan
SE4220077
Mutator
M13
CcLG11:31953520-31953756
CTTTGCAAC
TTGCAACGGATCCGGATCCTCTGACTTTGAGA

Secondary structure and sequence

TSD TIR

5'

3'

CT      -C   TCC                A  -TATC       T     C  A      CTC                   A                         AAATATATT
  TTGCAA  GGA   GGATCCTCTGACTTTG GA     AAAGTTA GGTAA TT ACACAT   AATCGTTGGATTTGTAATA TAGATCAGATTGTGACACGTGTACA         
  ||||||  |||   |||||||||||||||| ||     ||||||| ||||| || ||||||   ||||||||||||||||||| |||||||||||||||||||||||||         T
  AACGTT  CCT   TCTAGGGGGCTGAAAC CT     TTTCAAT CCATT AA TGTGTA   TTAGTAACCTAAACATTAT ATCTAGTCTAGCACTGTGCACATGT         
 C      TC   TTA                -  CCCCT       C     A  A      AAT                   C                         AAATTCAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220077

CTTTGCAACGGATCCGGATCCTCTGACTTTGAGATATCAAAGTTATGGTAACTTAACACATCTCAATCGTTGGATTTGTAATAATAGATCAGATTGTGACACGTGTACAAAATATATTTTAACTTAAATGTACACGTGTCACGATCTGATCTACTATTACAAATCCAATGATTTAAATGTGTAAAATTACCCTAACTTTTCCCCTCCAAAGTCGGGGGATCTATTTCCCTTTGCAAC

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