Plant MITE

SE4230079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2847
Cajanus cajan
SE4230079
hAT
Hat2
CcLG07:2701389-2701694
GTGAGGCC
GGCCCAAGGACGGAGCCAAGGGGGGACC

Secondary structure and sequence

TSD TIR

5'

3'

GTGA    ----  A           ------------A      A  --TAC     ----  - C  CCCCCCCAACAATTTTAATTTTTTTTTATATACATATATATTACTATATGGCACCCCCTATTTTTAATATAAACTCATATGTATAATTAAATGAATAA
    GGCC    CA GGACGGAGCCA             GGGGGG CC     GGGTG    CC A GG                                                                                                  
    ||||    || |||||||||||             |||||| ||     |||||    || | ||                                                                                                  C
    CCGG    GT CCTGCCTCGGT             CCCCCC GG     AACCT    AG T TA                                                                                                  
        AGTG  C           CCTAAAGTTATGA      -  CTCTT     TACT  T -  CTCCGCGATGTAAAAAAATTTTTTTTTTTTTAAGGTTTCACTATGGTGTATCGTCCGGCATGGTCTTCAGGTTTTCAACTTATTTTTTTATTTAAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4230079

GTGAGGCCCAAGGACGGAGCCAAGGGGGGACCTACGGGTGCCACGGCCCCCCCAACAATTTTAATTTTTTTTTATATACATATATATTACTATATGGCACCCCCTATTTTTAATATAAACTCATATGTATAATTAAATGAATAACCCAAATTTATTTTTTTATTCAACTTTTGGACTTCTGGTACGGCCTGCTATGTGGTATCACTTTGGAATTTTTTTTTTTTTAAAAAAATGTAGCGCCTCATTTGATCATTCCAATTCTCGGCCCCCCAGTATTGAAATCCTGGCTCCGTCCCTGGTGAGGCC

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