SE4220080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2848
  • Cajanus cajan
  • SE4220080
  • Mutator
  • M2
  • CcLG11:6251919-6252348
  • TAAATAATT
  • GGTAAAAATATACTTTTCGTTTCTTATATTATTTATTAAATTTAATTTAATCTTATTTTAATTAATTGAATCAATTTAATCTTACATTTTTAAAATATATCTAAATATTTGATTTTTCGTCTTTTCCATTTAAATACTTAGTGAATGTGATACGTGTCATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAATT            C                         AAT        A      T       A             AT                A     A   A          C         A        CT   TGA                  TA   --     ATGATATAATACATGACATGACATGTGGCATGAT
         GGTAAAAATATA TTTTCGTTTCTTATATTATTTATTA   TTAATTTA TCTTAT TTAATTA TTGAATCAATTTA  CTTACATTTTTAAAAT TATCT AAT TTTGATTTTT GTCTTTTCC TTTAAATA  TAG   ATGTGATACGTGTCATGT  TCA  TGTAT                                  
         |||||||||||| |||||||||||||||||||||||||   |||||||| |||||| ||||||| |||||||||||||  |||||||||||||||| ||||| ||| |||||||||| ||||||||| ||||||||  |||   ||||||||||||||||||  |||  |||||                                   
         CCATTTTTATAT AAAAGCAGAGAATATAATAAATAAT   AATTAAAT AGAGTG AATTAAT AACTTAGTTAAAT  GAATGTAGAAATTTTA ATAGA TTA AAATTAAAAA TAGGAAAGG AAATTTAT  ATT   TACACTATGCACAGTGCA  ACG  ACTGT                                  
TTAATAAAT            A                         CGC        C      C       A             CT                C     G   C          A         C        AT   GTC                  --   GC     GTACAGTATAACAGTACTACTGTGCACAGTACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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