SE4240083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2851
  • Cajanus cajan
  • SE4240083
  • CACTA
  • Ca2
  • CcLG01:6507113-6507398
  • ATA
  • CACTACAAGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA        G   TATTA      A       ------C         CATTATAGGTATAATATATGTAGATATATGTCTATTTGACATATAGTTATACACAATTTTAGTATTGATTTTGATTGAGATTTAACAACATATTTT
   CACTACAA AAA     CATGTA TGACATA       AAAAAGTGT                                                                                                
   |||||||| |||     |||||| |||||||       |||||||||                                                                                                 
   GTGATGTT TTT     GTATAT ACTGTGT       ATCACTGTG                                                                                                
ATA        G   TAACA      C       ATAGGAT         ATATATATAGTGATTTTTAATAAAAATGTGTGTGTTATTGATATTATATACAACTATATAATAATTTTTCACATCCATATCTGATATTACTGTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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