Plant MITE

SE4220088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2856
Cajanus cajan
SE4220088
Mutator
M15
Scaffold137207:6662-6858
ATTAAAAAT
AATGAGGAGTGCTATATCCTCCGAAAACTATACGAAACAATTGTCG

Secondary structure and sequence

TSD TIR

5'

3'

ATTAAA          G    AT           -   A -      AT G   AAAG       TA     ATT    ATAATTTTATTATTAAATAATT
      AATGAGGAGT CTAT  CCTCCGAAAAC TAT C GAAACA  T TCG    TTTAAAA  ATAAT   TTTA                      
      |||||||||| ||||  ||||||||||| ||| | ||||||  | |||    |||||||  |||||   ||||                       
      TTACTTTTTA GATG  GGAGGCTTTTG ATA G CTTTGT  A GGC    AAATTTT  AATTA   AATT                      
TAAAAA          A    CT           C   A A      GT G   CTAG       TT     ---    TAATATTTTATAATTTAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4220088

ATTAAAAATGAGGAGTGCTATATCCTCCGAAAACTATACGAAACAATTGTCGAAAGTTTAAAATAATAATATTTTTAATAATTTTATTATTAAATAATTATTTAATTTAATATTTTATAATTTAAATTAATTTTTTAAAGATCCGGGATGTGTTTCAGAATACGTTTTCGGAGGTCGTAGAATTTTTCATTAAAAAT

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