SE4260089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2857
  • Cajanus cajan
  • SE4260089
  • Micron
  • Mim1
  • CcLG11:7758954-7759386
  • TATATAT
  • TATATATATAGAGGAGGGATCCTTTTACTCTAGGAGTAAGTCTAGATAGACTTATTCCGTTCAATAACTCATATTTTACATCAAATTTCAATGATCCAACCGTTCAATTTAAAATTCTTAATGCATAGATCAAATCTGTAAATTTTAAAAATTTTAAAAATTATTTGATAGTTCATTTCATTAATTCGAATCAATGTATAAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
TA          G          C                      GA          C    C          A                          CC         A  A                     C          ---A       TA              G                    CA   T    -A   AT
  TATATATATA AGGAGGGATC TTTTACTCTAGGAGTAAGTCTA  TAGACTTATT CGTT AATAACTCAT TTTTACATCAAATTTCAATGATCCAA  GTTCAATTT AA TTCTTAATGCATAGATCAAAT TGTAAATTTT    AAAATTT  AAAATTATTTGATA TTCATTTCATTAATTCGAAT  ATG ATAA  ATG  
  |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||| |||| |||||||||| ||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||| ||||||||||    |||||||  |||||||||||||| ||||||||||||||||||||  ||| ||||  |||   
  ATATATATAT TCCTCCCTAG AAAATGAGATCCTCATTCAGAT  ATCTGAATGA GCAA TTATTGAGTA AAGATGTAGTTTAAAGTTGCTAGGTT  CAAGTTAAA TT AAGAATTACGTATCTAGTTTA ACATTTAAAA    TTTTAAA  TTTTAGTAAACTAT AAGTAAAGTAATTAAGTTTA  TGC TATT  TAT  
            A          A                      GG          A    A          C                          AT         G  C                     T          AATC       -C              G                    AC   C    AG   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End