Plant MITE

SE4250098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2866
Cajanus cajan
SE4250098
PIF/harbinger
To8
CcLG11:9466840-9467105
TAA
GTTTGGATAAACTTCTCCTAAAGCACTTCTAAGAGAAAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TAAGAGCAA           C     CT    C       A    A     ACAA    -      TAAAATAAACTTCTC     A      C       CG A       AAAATA     - TAGAGAATTTAAT
         GTTTGGATAAA TTCTC  AAAG ACTTCTA GAGA AAAAA    GAAG AAAAAT               CATAA CTAAAA TAACTTA  C TAAGTTG      AGATT T             
         ||||||||||| |||||  |||| ||||||| |||| |||||    |||| ||||||               ||||| |||||| |||||||  | |||||||      ||||| |              
         CAAACCTATTT AAGAG  TTTT TGAAGAT CTCT TTTTT    CTTC TTTTTA               GTATT GATTTT ATTGAAT  G ATTCGAT      TATAC T             
AATCCCAGA           A     AT    A       C    C     -ATC    C      -CTTCATTCAAAATT     C      A       AA C       ------     A CTTCGAAAGAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250098

TAAGAGCAAGTTTGGATAAACTTCTCCTAAAGCACTTCTAAGAGAAAAAAAACAAGAAGAAAAATTAAAATAAACTTCTCCATAAACTAAAACTAACTTACGCATAAGTTGAAAATAAGATTTTAGAGAATTTAATATGAGAAAGCTTCTACATATTAGCTTACGAATAAGTTAATTTTAGCTTATGTTAAAACTTACTTCATTTTTCCTTCCTATTTTTCTCTCCTAGAAGTATTTTTAGAGAAATTTATCCAAACAGACCCTAA

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