SE4250103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2871
  • Cajanus cajan
  • SE4250103
  • PIF/harbinger
  • To30
  • CcLG02:26560994-26561128
  • TTA
  • TAGTGCATGTCTGGATTCACGTTTCCAATTCACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
  T     CA   C   A           -------A        TTTAACCGATT      A       AAAATCA
   TAGTG  TGT TGG TTCACGTTTCC        ATTCACGT           TGACGC GAAGTAA       
   |||||  ||| ||| |||||||||||        ||||||||           |||||| |||||||        
   GTCAC  ACA ATC AAGTGCAAAGG        TGAGTGCA           GCTGCG TTTTATT       
ATT     --   A   A           GCCCGAAC        --------TTT      C       CTGCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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