SE4230104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2872
  • Cajanus cajan
  • SE4230104
  • hAT
  • Hat8
  • CcLG07:12515416-12515825
  • CATTTGAC
  • CATTTGACCTATGATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT  AC      T  A        ATA -  GTATCGGATACGACACGTATCCGATACGGCGATACGATTATTTAAAAATATATAGGATACGATACTTGTAAGATACGTGTTCATCAAGGACCAATAGTTTTATGTTTCTATATTAAACATGTTTATATATCTTATTTAGCTGTAATGGATATTTCATAATTTTTCAAAAATTTG
  CA  TG  CTATGA GC CCGATACG   C GC                                                                                                                                                                              
  ||  ||  |||||| || ||||||||   | ||                                                                                                                                                                               
  GT  AC  GATACT CG TGCCTATG   A TT                                                                                                                                                                              
CA  TT  --      T  -        --A G  AAACGAAGTGCATAGGCATAGGCTATGCATAGGCTGTGCTATGAGAACCTATGAAGTGGCTATGCACAGTTACTTCATAGGATCGGAAATTTTTATAATATTTTTAAAATAAGTTAAAACTATGAAAGTATATGAAGTGGCTATGAATAATCACTATATATAGTTATTTCACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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