SE4230109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2877
  • Cajanus cajan
  • SE4230109
  • hAT
  • Hat1
  • CcLG06:17054857-17055248
  • CATCTACC
  • TAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CATCTACC         G  AAAAACTCAAATT    CGAACCGATCCATAACCGATCCGATCCATATTGAAAAATCCGATCCATTTTGAAAAAAATCTGAACCGAACCACTTTATAAAACCGGTTCAGTTATCCGATCTATTTTTACAAAGTAGATCGGTTCGGTTCGGTTTGGTTTTCTAAAAAAACCGATCCATATATG
        TAGGGGTGT CA             GATC                                                                                                                                                                     
        ||||||||| ||             ||||                                                                                                                                                                     A
        ATCCCCACA GT             ACCT                                                                                                                                                                     
CCATCTAC         A  -------------    AGCCAAAGTTTTTTGGCTAGGTTTGGCTTGGCTTGACAAAATATTTTCACCTAGCCAATTGGCTAGGTAAAAAATATTTCACCTAACCAAACTAAAAAAATTTTATACCTAGCCAAAAAAACTTTAACCTAGCCAAGCCACGCCACGTCAATAGGTGAAAAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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