SE4210113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2881
  • Cajanus cajan
  • SE4210113
  • Tc1/Mariner
  • St2
  • CcLG07:2437429-2437789
  • TA
  • TACTCCCTCCGTTTTTTATTTATAGTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
      C                        -----------------------------TG      TT  TCATTTTTTTTATTGTCATTTTACTAAAATCAATAACTTATTAATTTTTTTTCTTATTTTTATCTTTGATAATTAATGTATGTTTATTGAATAATGTGTTTATTTATTTTTAATATTTACCTAT
TACTCC TCCGTTTTTTATTTATAGTTGTTT                               TTAGAA  TG                                                                                                                            
|||||| ||||||||||||||||||||||||                               ||||||  ||                                                                                                                             
ATGAGG AGGCAAAGAATAAGTATCAGTAAA                               TTATAA  AA                                                                                                                            
      A                        TTCTAAAATGTGCCCTAAATTCTTTTACTAA      --  TCAAAAGTTTTTATAAATAATAAATGAAAGGATAAGATGAGAGATAAATAAAATATCATAAAGCAACCTTTATATAATAGGAAAATTTACGTTGTAATTGAAGTGTATTCACCAACCTCTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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