SE4250115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2883
  • Cajanus cajan
  • SE4250115
  • PIF/harbinger
  • To1
  • Scaffold000032:837205-837425
  • TAA
  • AGAGTATCTTCAATGGGGTTGCTTATAAGCAATCTCTTGTGCCATATCACTGTCAAATCAGTTCTGACCCACTTTATAGATTGCTTAAATTTTAGCAAAATTGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         T      -                   C                   A          A  -        A A                   A      CT
  AGAGTATCT CAATGG GGTTGCTTATAAGCAATCT TTGTGCCATATCACTGTCA ATCAGTTCTG CC CACTTTAT G TTGCTTAAATTTTAGCAAA TTGCTT  
  ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||| | ||||||||||||||||||| ||||||   
  TCTCGTAGA GTTACC CTAACGAATATTCGTTAGG AACACGGTGTAGTGACAGT TAGTCGAGAC GG GTGAAATA C AACGAATTTAAAATCGTTT AACGAA  
AA         C      T                   A                   G          -  A        C C                   C      CA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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