SE4230119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2887
  • Cajanus cajan
  • SE4230119
  • hAT
  • Hat1
  • Scaffold130267:395652-396029
  • TATAAAGC
  • TAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAGC         G  AAAA   TAAATTGATCCGAACCGATCCATATTGAAAAATCCGATCCATTTTGAAAAAAATCCAAACCGAACCACTTTATAAAACCGATTCAGTTATCCGATCCATTTTTACAAAGTGGATCGGTTCAGTTCGGTTTGGTTTTCTAAAAAACCCGACCCATATGTGAGTAA
        TAGGGGTGT CA    ATC                                                                                                                                                                    
        ||||||||| ||    |||                                                                                                                                                                     
        ATCCCCACA GT    ACC                                                                                                                                                                    
CGAAATAT         A  ----   TAGCCAAAAAACTTTTTTGGCTAGGTTTGGCTTGGCTTGGCAAAATATTTTCACCTAGCCAATTGGCTAGGTAAAAAATATTTCACATAGCCAAACTAAAAAATTTTAAACCTAGCCAAAAAAACTTTAACCTAGCCAAACCACGCCACGTCAATAGATGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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