SE4230122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2890
  • Cajanus cajan
  • SE4230122
  • hAT
  • Hat9
  • Scaffold134048:21525-21981
  • CTTCTTGG
  • GGCATGGTTTTAAATTGCAGTTGCGGTCGCGGTTGCGGTCGCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCTT                 CA -      T    -              ---      TA    GGTTGCGGGTATTGCGGGTATTGCGATGCGAATTGCGGCTGTTGCGGTGTGAGATTATTAATTATTTTCACTAAATATAAAAAATTTATAATTATCAATATATATTTTATTTTTAAGGATTTATACATTTTAATTCCTTTTTTTTTTAAATATTCTATTATTTT
      GGCATGGTTTTAAATTG  G TTGCGG CGCG GTTGCGGTCGCGGT   TGCAGT  CTGC                                                                                                                                                                    
      |||||||||||||||||  | |||||| |||| ||||||||||||||   ||||||  ||||                                                                                                                                                                    A
      TCGTACCAAAATTTAAC  C GGCGTT GTGC CAACGCCGGCGTTA   CGACAA  CGCC                                                                                                                                                                    
GGTTCT                 AC T      -    A              TAA      --    GGAACAGGCGTTGCCATAGCCTGGCGTTAACGCTACTATGACCTTTAGTGTGTAAAAAGGCGTTGCATTGCCACAACGCAGACGTTGTGTAGACATTACATGGCGTTATGTAGGCGTTGTGCTATTTAACTATGATATTAAAATTTTATTTAATTTAATAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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