SE4230124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2892
  • Cajanus cajan
  • SE4230124
  • hAT
  • Hat10
  • CcLG02:20053893-20054334
  • GTTGTGTC
  • CCATGGTTGTCAATCTCGAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGTGT   T          C     T -------ACAACTCGTAGTA   A  -       CAAGATTGGTCGGTCCCACTTATACAACTTGGAAGTAAACTCATTTTTGAACAATCTCGAGCAATCTTGCCCAATCTCGTGCAATCACAAGCAATCTCGACCCCTTTGTTGCTAAAAGGAAAAATTAGTCGTAGTTTTTTATTTGTTATTTTAAGAACTTGT
       CCA GGTTGTCAAT TCGAG G                    ACT CT AAGTTTA                                                                                                                                                                  
       ||| |||||||||| ||||| |                    ||| || |||||||                                                                                                                                                                  A
       GGT CCAACAGTTA AGCTC C                    AGA GT TTTGAGT                                                                                                                                                                  
CTGTGTT   T          A     T AAATCAATTAAAACAACTCC   -  A       TTAATATTCAAGCATTCTCAAATGAATTATATTTTTTATATAATATTATGAATATTTATTGTATTAATGAGTTATAAAGTTGAGGTATAATTTCATTTTATCTTTTGATTTTGTAATTTCATCATTACAAACCATCGTTTAGTACGTTTTAAAGTATGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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