SE4220125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2893
  • Cajanus cajan
  • SE4220125
  • Mutator
  • M17
  • CcLG04:870690-871389
  • ACGCAAAGG
  • GC

Secondary structure and sequence

TSD    TIR
5'



3'
   AC  AAAGG         A                                                                                                                                              A                                                                                                                                   C             A                  GAAT  -   A     C    CAAA
     GC     GAATTTTTT CTGGAATAATATTTTTTTTAAAAAAAATTACAAGAATGATCACTGTGCAGGATTATTTACCAAGATAGAACCATTTACTGTTCAAGCTCAGAATTCGGTTCCCCGGGAACCGAATTCTGAGCATCAAAATGTAATTTTTTTT TTTTTTCAACTCAGAATTCGGTTCCCGGGGAACCGAATTCTGAGTTGGTTTTAAATTTTTTTTTTTTCGTGTATGGGGCAAATGTGGGCTGATCTGGGAAGCGGAACGGCCCGTTCCAAAAGCAGAACGGG CGTTCTGCTTAAA AAACAGAGTGCAAATTCT    GT GAA GGGCC GTTC    
     ||     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    || ||| ||||| ||||     
     CG     CTTAAAAAA GACTTTATTATAAAAAAAATTTTTTTTAATGTTCTTACTAGTGACACGTCCTAATAAATGGTTCTATCTTGGTAAATGACAAGTTCGAGTCTTAAGCTAAGGGGCCCTTGGCTTAAGACTCGTAGTTTTACATTAAAAAAAA AAAAAAGTTGAGTCTTAAGCCAAGGGCCCCTTGGCTTAAGACTCAACCAAAATTTAAAAAAAAAAAAGCACATACCCCGTTTACACCCGACTAGACCCTTCGCCTTGCCGGGCAAGGTTTTCGTCTTGCCC GCAAGACGAATTT TTTGTCTCACGTTTAAGA    CG CTT CCCGG CAAG    
GGAAA  ---CA         A                                                                                                                                              C                                                                                                                                   A             C                  AATT  T   G     -    ACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End