SE4220127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2895
  • Cajanus cajan
  • SE4220127
  • Mutator
  • M18
  • Scaffold126862:322966-323428
  • ACAAAACTA
  • GGCTAAATTATACTTTTGGTCCCTCTATTTATTTTTAAGATTTAATTTGGTCCCACTATTTTTAAATGGTTCAATTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3'
ACAAAACTA            C         C              A                 C          T    C         ATCT       TA     A         A      C        A  C                     CAAT      A             -CGTCTA        -             T     --      TTCAATTT
         GGCTAAATTATA TTTTGGTCC TCTATTTATTTTTA GATTTAATTTGGTCCCA TATTTTTAAA GGTT AATTTGGTT    GATTTTT  AAAAT TTCAATGTT TCCTTT GTCCAAAT GA ATTAGCGGCGTTAATGAAGTT    GGAAGG TAACATTGAACAT       AAAATTAG TGATCAAATTGAA CATTT  AAAATG        
         |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||    |||||||  ||||| ||||||||| |||||| |||||||| || |||||||||||||||||||||    |||||| |||||||||||||       |||||||| ||||||||||||| |||||  ||||||         
         CCGATTTAATAT AAAATTAGG AGATAAATAAAAAT CTAAGTTAAATCAGGGT ATAAAAATTT CCAA TTAAATCGG    TTAAAAG  TTTTA AAGTTACAA AGGAAA CAGGTTTA CT TGATTGCTGTAATTACTTTAA    CTTTCC GTTGTAATTTGTA       TTTTAATC ACTGGTTTAACTT GTAAA  TTTTAT        
ATCAAAATA            A         A              C                 A          T    C         GAAT       TA     C         C      A        A  A                     TCCC      C             AAAAAAC        T             -     AT      TATCCTAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End