SE4220131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2899
  • Cajanus cajan
  • SE4220131
  • Mutator
  • M1
  • CcLG11:35099195-35099394
  • TAGTTATAA
  • AGAGTTAATCACCTATACATTGTTAACGTAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTTATA            C    C        C      TTTTTT                                       ---------   TG   AA
        AGAGTTAATCAC TATA ATTGTTAA GTAAAG      TACATTGACAATTAATTATATATTTTAATTGTGTTATGT         CAC  TTA  
        |||||||||||| |||| |||||||| ||||||      |||||||||||||||||||||||||||||||||||||||         |||  |||   
        TCTCAATTAGTG ATAT TAATAATT CATTTT      ATGTAACTGTTGGTTAATATATAAAATTAACACAGTATA         GTG  AAT  
AATATTGA            A    A        C      -TTAAT                                       ATAACATTT   TA   GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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