SE4220135

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2903
  • Cajanus cajan
  • SE4220135
  • Mutator
  • M19
  • Scaffold000216:130415-131062
  • TATAATAAA
  • AGATTAAATTATACTTTTAATCAATTATCTTGTTTTTTAAATTTATTTTGATCATTTAACTTTTAAAATATTCACTTTGGTCTTTTCTTTTTTAAATTTGGATCAATTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATAA             C    AA   A             T              CA    A   -       A    C       T   C  TT   A        CA     ATTC   C      TTA        C       A  CAC           --T      A  T      A  TTT   T    CT                        TATTAAACA    - GAA   TAAACAAAATA ------   CATAAACATAATGAAAGTTGCATAAAAATAAGTCCACTAAGAAATTGAAAAGTTCAAAAAATGTACTTTTAT
        AGATTAAATTATA TTTT  TCA TTATCTTGTTTTT AAATTTATTTTGAT  TTTA CTT TTAAAAT TTCA TTTGGTC TTT TT  TTA ATTTGGAT  ATTTG    TTT AAAATA   ATTATTTT AATTTTA GA   AATTTTGAATC   TTTTTA CT ATTCAA AT   AAA TTGT  TATTAGATTTATTTATATGAAAAT         CAAC T   ATT           A      TGT                                                                        
        ||||||||||||| ||||  ||| ||||||||||||| ||||||||||||||  |||| ||| ||||||| |||| ||||||| ||| ||  ||| ||||||||  |||||    ||| ||||||   |||||||| ||||||| ||   |||||||||||   |||||| || |||||| ||   ||| ||||  ||||||||||||||||||||||||         |||| |   |||           |      |||                                                                         
        TCTAATTTAATAT AAAA  AGT AATAGAATAAAAA TTTAAATAAAACTA  GAAT GAA AATTTTA GAGT AAATCAG GAA AG  AAT TAAATCTA  TAAAC    AAA TTTTAT   TAGTAAAA TTAAAAT TT   TTAAAACTTAG   AAAAAT GA TAAGTT TG   TTT AACA  GTAATTTAAATGAATATACTTTTA         TTCT T   AAG           T      CGA                                                                        
AAATAATA             T    CC   A             -              AG    -   T       C    A       C   T  TT   C        AC     -CAT   A      TAC        A       A  ATA           TTT      -  T      C  CAC   C    TT                        --------T    T ---   ----------- TAATTT   GTCTAGGTTTACCCGATATTCGTATCACTTGTAGAACAATTTTTATATAGAGTGTTCATTGATCTTTTATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End