SE4220136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2904
  • Cajanus cajan
  • SE4220136
  • Mutator
  • M20
  • CcLG03:21573299-21573704
  • CTCTCTTTT
  • GGTTCATGATATATACACCTCCTTTTTTCTATAATTACACATCCTTTTAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
CTCTCTTTT                            -C     T     A       AAA     TAATT      T         TT          TTTT   TTT             CCA    A        AG          -------        C   CCTCC                     -   CTCTTATTTTTTCT
         GGTTCATGATATATACACCTCCTTTTTT  TATAA TACAC TCCTTTT   AAAAA     AAAATT TAAAATATT  TAATTTTTTG    AAA   TTTAATTTTACAT   CAAC TTTAATTT  TACTTTTTTT       TCACATAT TTT     TTTTTTTCAATTTTTACATGC ACT              
         ||||||||||||||||||||||||||||  ||||| ||||| |||||||   |||||     |||||| |||||||||  ||||||||||    |||   |||||||||||||   |||| ||||||||  ||||||||||       |||||||| |||     ||||||||||||||||||||| |||              T
         CCGAGTACTATATATGTGGAGGAAAAAA  ATATT ATGTG AGGAAGA   TTTTT     TTTTAA ATTTTATAA  ATTAAAAAAT    TTT   AAATTAAAATGTG   GTTG AAGTTAAA  ATGAAAGAAG       AGTGTGTA AAA     AGAGAAAGTTAAAAGTGTACG TGG              
TTTTCTCTC                            AA     C     G       AAA     -----      T         -T          ----   TTT             AAA    A        CG          AAGAATA        A   --AAA                     A   TTTTATCCACCCAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End